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Bioinformatics & Computational Biology
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Transcriptomic Analysis of Pseudomonas putida in Varied Growth Conditions
Keyword:
Soil
,
Pseudomonas Putida
,
Genetically Engineered Microbes
,
RNA-Seq
,
Transcriptomics
, and
Gene Ontology
Creator:
Guzman-Jerry, Gabriella
Advisor:
Farny, Natalie
Publisher:
Worcester Polytechnic Institute
Date Created:
2024-04-24
Resource Type:
Major Qualifying Project
Machine Learning Analysis of Neuroimaging (MRI) Data to Distinguish Patients with Focal Cortical Dysplasia Type II
Keyword:
Deep Learning
,
MRI
,
Machine Learning
, and
Python
Creator:
Golden, Jonathan
and
Kandasamy, Vivek
Advisor:
Korkin, Dmitry
,
Rodriguez, Angela C Incollingo
, and
Nephew, Benjamin
Publisher:
Worcester Polytechnic Institute
Date Created:
2024-04-25
Resource Type:
Major Qualifying Project
Transcriptomics of temperature adaptation in moss
Keyword:
Physcomitrium patens
,
Transcriptomics
,
Moss
,
myosin XI
,
Bioinformatics
, and
Tip growth
Creator:
Nakagawa, Carter
Advisor:
Vidali, Luis
Publisher:
Worcester Polytechnic Institute
Date Created:
2024-04-25
Resource Type:
Major Qualifying Project
Deep Learning Analysis on Neuroimaging Data to Distinguish Anxiety and Depression Diagnoses in Adolescents
Creator:
Kongsomjit, Pitipat
and
Deckers, Olivia
Advisor:
Nephew, Benjamin
,
Korkin, Dmitry
, and
Rodriguez, Angela C Incollingo
Publisher:
Worcester Polytechnic Institute
Date Created:
2024-03-22
Resource Type:
Major Qualifying Project
Development of a Novel scRNAseq Pipeline and Analysis of Influenza-Infected Mouse Lung Cells
Keyword:
scRNAseq
and
disease tolerance
Creator:
Raven, Emmaline
Advisor:
Ryder, Elizabeth F.
Publisher:
Worcester Polytechnic Institute
Date Created:
2023-08-14
Resource Type:
Major Qualifying Project
Computational and Data Science Tools for Environmental Science: Butterflies
Keyword:
Butterfly Populations
,
Data Visualization
,
Beecology
,
Data Analysis
,
Butterfly Observation
, and
Pollinator Decline
Creator:
Strano, Sophia
Advisor:
Ruiz, Carolina
and
Ryder, Elizabeth F.
Publisher:
Worcester Polytechnic Institute
Date Created:
2023-04-23
Resource Type:
Major Qualifying Project
Defining the role of a conserved G protein activator RIC-8 in neuronal heat shock response
Keyword:
Bioinformatics
,
Heat shock
,
Heat stress
,
Primary cilia
,
C. elegans
, and
RIC-8
Creator:
LaBombard, Adam
Advisor:
Ryder, Elizabeth F.
and
Nechipurenko, Inna
Publisher:
Worcester Polytechnic Institute
Date Created:
2023-04-27
Resource Type:
Major Qualifying Project
Modeling the Microbiome
Creator:
Datta, David
Advisor:
Ryder, Elizabeth F.
and
Rao, Reeta Prusty
Publisher:
Worcester Polytechnic Institute
Date Created:
2023-04-29
Resource Type:
Major Qualifying Project
Using Protein Interaction Modeling to Understand Exocyst Assembly and Tethering Dynamics in Exocytosis
Creator:
Byrne, Chloe
Advisor:
Vidali, Luis
Publisher:
Worcester Polytechnic Institute
Date Created:
2023-05-01
Resource Type:
Major Qualifying Project
The Clever Critters Podcast: Exploring Animal Cognition, Intelligence, and Tool Use
Keyword:
Tool Use
,
Intelligence
, and
Cognition
Creator:
Govani, Samay
,
Thomas, Anna
,
Demers, Maline
, and
Bernabel, Genesis
Advisor:
Bakermans, Marja
Publisher:
Worcester Polytechnic Institute
Date Created:
2023
Resource Type:
Other
Genetics of Muscular Dystrophy
Keyword:
Machine Learning
,
Linear Regression
, and
Muscular Dystrophy
Creator:
Moy, Justin
Advisor:
Ryder, Elizabeth F.
Publisher:
Worcester Polytechnic Institute
Date Created:
2022-04-27
Resource Type:
Major Qualifying Project
Multi-cell RNA-Seq: A computational approach
Keyword:
Transcriptomics
,
BCB
,
RNA Seq
,
Bioinformatics
,
Single Cell RNA Seq
, and
Bulk RNA Seq
Creator:
Cazaubiel, Jules
and
Tourtillott, Nicholas
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2022-04-28
Resource Type:
Major Qualifying Project
Existing and Inducible Antibiotic Resistance in Worcester, Massachusetts
Keyword:
Soil
,
Antibiotics
,
Antibiotic Resistance
,
Metabolite
, and
Bacteria
Creator:
McBrine, Rachel
and
Baker, Emily
Advisor:
Buckholt, Michael Allan
and
Ryder, Elizabeth F.
Publisher:
Worcester Polytechnic Institute
Date Created:
2022-04-28
Resource Type:
Major Qualifying Project
Expanding Beecology Project’s Web Application for Butterfly Observations
Keyword:
Web application
,
Pollinator decline
, and
Beecology
Creator:
Pecorale, Aidan
and
Poulos, Jared
Advisor:
Ryder, Elizabeth F.
and
Ruiz, Carolina
Publisher:
Worcester Polytechnic Institute
Date Created:
2022-04-28
Resource Type:
Major Qualifying Project
Moving Forward: Lessons Learned by the Federal Government From the Medical Equipment Supply Chain Crisis During the Covid-19 Pandemic and the Path to Supply Chain Resiliency
Keyword:
International Trade
,
Medical Equipment
,
Supply Chain
,
United States Government
,
Covid-19
, and
Healthcare
Creator:
Baker, Emily
Advisor:
Galante, John S.
Publisher:
Worcester Polytechnic Institute
Date Created:
2022-04-28
Resource Type:
Major Qualifying Project
Using Proximity Labeling to Characterize the Protein Neighborhood of the Moss Exocyst Complex and Myosin XI
Keyword:
TurboID
,
Moss
,
Proximity Labeling
,
Biotinylation
,
Exocyst
, and
Physcomitrium Patens
Creator:
Mora, Samantha
,
Musser, Emily
, and
Tatone, Julia
Advisor:
Vidali, Luis
and
Ryder, Elizabeth F.
Publisher:
Worcester Polytechnic Institute
Date Created:
2022-04-28
Resource Type:
Major Qualifying Project
Direct RNA Sequencing and Transcriptomic Analysis of Pseudomonas putida
Keyword:
Direct RNA Sequencing
,
Pipeline
,
Bacteria
,
Python
,
Soil Environment
, and
Transcriptomics
Creator:
Voltmer, Stokley
and
Grant, Maia
Advisor:
Young, Eric Mosher
and
Farny, Natalie
Publisher:
Worcester Polytechnic Institute
Date Created:
2022-04-29
Resource Type:
Major Qualifying Project
Exploring the Domestication of Foxes
Keyword:
Domestication Syndrome
,
Hybridization
,
Fox
,
OER
, and
Domestication
Creator:
Mora, Samantha
,
Casserly, Matthew
,
Rudnik, Katelin
,
Nagy, Matthew
, and
Garcia, Sabine
Advisor:
Bakermans, Marja
Publisher:
Worcester Polytechnic Institute
Date Created:
2022
Resource Type:
Report
Using AI to Predict Protein Structural Stability
Creator:
Sultan, Mir
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2021-08-13
Resource Type:
Major Qualifying Project
Viral Pathogenicity with AI
Keyword:
Bioinformatics
and
Machine Learning
Creator:
Simpson, Parker
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2021-08-16
Resource Type:
Major Qualifying Project
Curating a Pipeline for Analyzing and Visualizing Gene Expression Data in Psychiatric Disorders
Keyword:
Single Cell Sequencing
,
Autism
,
Psychiatric Disorders
, and
Epigenetics
Creator:
Shedd, Nicole
Advisor:
Ryder, Elizabeth F.
and
Nechipurenko, Inna
Publisher:
Worcester Polytechnic Institute
Date Created:
2021-05-05
Resource Type:
Major Qualifying Project
Transcriptomics Analysis of Pseudomonas Putida for Implementation of Soil Microbial Biosensor
Creator:
Harding, Kyle R.
Advisor:
Young, Eric Mosher
and
Farny, Natalie
Publisher:
Worcester Polytechnic Institute
Date Created:
2021-05-06
Resource Type:
Major Qualifying Project
Exploratory Cluster Analysis of Bumblebee and Plant Interaction Data
Keyword:
Network
,
Data Analysis
,
Bioinformatics
,
Native
,
Beecology
, and
Bombus
Creator:
Ressler, Andrew
and
Wicke, Meadow R.
Advisor:
Ryder, Elizabeth F.
and
Ruiz, Carolina
Publisher:
Worcester Polytechnic Institute
Date Created:
2021-05-06
Resource Type:
Major Qualifying Project
Phylogenetic and in vivo analysis of MRB proteins in Physcomitrella patens
Creator:
Hollands, Jordan
Advisor:
Vidali, Luis
Publisher:
Worcester Polytechnic Institute
Date Created:
2021-05-18
Resource Type:
Major Qualifying Project
Microbiome Models
Creator:
Norales, Monet M.
and
Daly, Daire D.
Advisor:
Rao, Reeta Prusty
and
Ryder, Elizabeth F.
Publisher:
Worcester Polytechnic Institute
Date Created:
2021-04-06
Resource Type:
Major Qualifying Project
Inferring distribution of material properties in wall structures of tip-growing cell
Creator:
Deng, Yaqi
Advisor:
Wu, Min
and
Vidali, Luis
Publisher:
Worcester Polytechnic Institute
Date Created:
2020-12-10
Resource Type:
Major Qualifying Project
Prioritizing Clinical Genomes
Keyword:
algorithm
,
variant
,
comparative analysis
, and
genomics
Creator:
Regan, Ilona M.
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2020-10-16
Resource Type:
Major Qualifying Project
Tissue Preservation Through Cryogenic Methods
Creator:
Schwamb, John Patrick
,
Howell-Munson, Alicia Nadine
,
Dettloff, Kristen
, and
Torres Yabar, Alessandra Sofia
Advisor:
Ryder, Elizabeth F.
,
Rolle, Marsha Whitney
, and
Heilman, Destin
Publisher:
Worcester Polytechnic Institute
Date Created:
2019-04-25
Resource Type:
Major Qualifying Project
Correlate Analyses for Acutely Infected HIV Individuals: Natural Disease Control Study
Creator:
Dickinson, Kylie Ann
Advisor:
Ryder, Elizabeth F.
Publisher:
Worcester Polytechnic Institute
Date Created:
2019-04-25
Resource Type:
Major Qualifying Project
Investigating the Unusual Gene Structure of DNA Primase in Mycobacteriophage Subclusters
Creator:
Champlin, Daniel Mathieu
,
Payano, Jennifer A.
, and
O'Connell, Eoin J.
Advisor:
Ryder, Elizabeth F.
and
Whitefleet-Smith, JoAnn L.
Publisher:
Worcester Polytechnic Institute
Date Created:
2019-04-23
Resource Type:
Major Qualifying Project
PubMed AuthorMap: A Study of Research Collaboration in the Life Science Fields
Creator:
Moulaison, Amanda Wylie
and
Northcott, Haylea Tricia
Advisor:
Ryder, Elizabeth F.
and
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2019-04-23
Resource Type:
Major Qualifying Project
Award:
Provost's MQP Award
Tracking DNA Damage Repair in Cancerous Cells
Creator:
Nicolella, Alyssa Alexandra
and
Corace, Michael L.
Advisor:
Manning, Amity L.
and
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2020-05-18
Resource Type:
Major Qualifying Project
The Creation and Utilization of Bioinformatics Tools to Study Patterns of the Presented HIV Immunopeptidome
Creator:
Le, Ann-Elizabeth V.
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2020-05-17
Resource Type:
Major Qualifying Project
An Agent-Based Model for Simulating Plant/Pollinator Interactions
Creator:
Spinney, Kerrin Elizabeth
Advisor:
Gegear, Robert J.
and
Ryder, Elizabeth F.
Publisher:
Worcester Polytechnic Institute
Date Created:
2016-09-12
Resource Type:
Major Qualifying Project
Development of a Ray Tracing Method for Modeling Shock Wave Focusing in a Lithotripter
Creator:
Jackson, Xavier Jamel
Advisor:
Makarov, Sergey N.
and
Ryder, Elizabeth F.
Publisher:
Worcester Polytechnic Institute
Date Created:
2016-04-09
Resource Type:
Major Qualifying Project
Exploring the Effects of Cell Structure on Plant Morphology Using Time-Series Microscopy and Computer Simulations of Moss Growth
Creator:
Levine, Max Fine
Advisor:
Vidali, Luis
Publisher:
Worcester Polytechnic Institute
Date Created:
2016-11-04
Resource Type:
Major Qualifying Project
Award:
Provost's MQP Award
MOLECULAR EVOLUTION OF EBOLA: A BIOINFORMATICS APPROACH
Creator:
Zhao, Yifan
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2015-09-11
Resource Type:
Major Qualifying Project
NeuroTracker 2.0: Improved Software for Neural Imaging in Freely-Moving Animals
Creator:
Cupido, Paul N.
,
Hess, Justin Peter
, and
Feng, Ellva
Advisor:
Albrecht, Dirk
,
Duffy, Joseph B.
, and
Ward, Matthew O.
Publisher:
Worcester Polytechnic Institute
Date Created:
2014-05-01
Resource Type:
Major Qualifying Project
Simulating Pollinator Decline: How pesticide affects bumble bees and the plants that they pollinate
Creator:
Blakely, Rachel Ilana
Advisor:
Ryder, Elizabeth F.
and
Gegear, Robert J.
Publisher:
Worcester Polytechnic Institute
Date Created:
2015-03-26
Resource Type:
Major Qualifying Project
Simulation of Early C. elegans Embryogenesis
Creator:
Warden, Rachel Marie
and
Thayer, Sarah Elizabeth
Advisor:
Ryder, Elizabeth F.
and
Ward, Matthew O.
Publisher:
Worcester Polytechnic Institute
Date Created:
2014-04-30
Resource Type:
Major Qualifying Project
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