Index Catalog // Digital WPI

Simulation of Early C. elegans Embryogenesis

Creator:: Warden, Rachel Marie and Thayer, Sarah Elizabeth
Advisor:: Ryder, Elizabeth F. and Ward, Matthew O.
Publisher:: Worcester Polytechnic Institute
Date Created:: 2014-04-30
Resource Type:: Major Qualifying Project

Simulating Pollinator Decline: How pesticide affects bumble bees and the plants that they pollinate

Creator:: Blakely, Rachel Ilana
Advisor:: Ryder, Elizabeth F. and Gegear, Robert J.
Publisher:: Worcester Polytechnic Institute
Date Created:: 2015-03-26
Resource Type:: Major Qualifying Project

NeuroTracker 2.0: Improved Software for Neural Imaging in Freely-Moving Animals

Creator:: Cupido, Paul N., Hess, Justin Peter, and Feng, Ellva
Advisor:: Albrecht, Dirk, Duffy, Joseph B., and Ward, Matthew O.
Publisher:: Worcester Polytechnic Institute
Date Created:: 2014-05-01
Resource Type:: Major Qualifying Project

MOLECULAR EVOLUTION OF EBOLA: A BIOINFORMATICS APPROACH

Creator:: Zhao, Yifan
Advisor:: Korkin, Dmitry
Publisher:: Worcester Polytechnic Institute
Date Created:: 2015-09-11
Resource Type:: Major Qualifying Project

Exploring the Effects of Cell Structure on Plant Morphology Using Time-Series Microscopy and Computer Simulations of Moss Growth

Creator:: Levine, Max Fine
Advisor:: Vidali, Luis
Publisher:: Worcester Polytechnic Institute
Date Created:: 2016-11-04
Resource Type:: Major Qualifying Project

Development of a Ray Tracing Method for Modeling Shock Wave Focusing in a Lithotripter

Creator:: Jackson, Xavier Jamel
Advisor:: Makarov, Sergey N. and Ryder, Elizabeth F.
Publisher:: Worcester Polytechnic Institute
Date Created:: 2016-04-09
Resource Type:: Major Qualifying Project

An Agent-Based Model for Simulating Plant/Pollinator Interactions

Creator:: Spinney, Kerrin Elizabeth
Advisor:: Gegear, Robert J. and Ryder, Elizabeth F.
Publisher:: Worcester Polytechnic Institute
Date Created:: 2016-09-12
Resource Type:: Major Qualifying Project

The Creation and Utilization of Bioinformatics Tools to Study Patterns of the Presented HIV Immunopeptidome

Creator:: Le, Ann-Elizabeth V.
Advisor:: Korkin, Dmitry
Publisher:: Worcester Polytechnic Institute
Date Created:: 2020-05-17
Resource Type:: Major Qualifying Project

Tracking DNA Damage Repair in Cancerous Cells

Creator:: Nicolella, Alyssa Alexandra and Corace, Michael L.
Advisor:: Manning, Amity L. and Korkin, Dmitry
Publisher:: Worcester Polytechnic Institute
Date Created:: 2020-05-18
Resource Type:: Major Qualifying Project

PubMed AuthorMap: A Study of Research Collaboration in the Life Science Fields

Creator:: Moulaison, Amanda Wylie and Northcott, Haylea Tricia
Advisor:: Ryder, Elizabeth F. and Korkin, Dmitry
Publisher:: Worcester Polytechnic Institute
Date Created:: 2019-04-23
Resource Type:: Major Qualifying Project

Investigating the Unusual Gene Structure of DNA Primase in Mycobacteriophage Subclusters

Creator:: Champlin, Daniel Mathieu, Payano, Jennifer A., and O'Connell, Eoin J.
Advisor:: Ryder, Elizabeth F. and Whitefleet-Smith, JoAnn L.
Publisher:: Worcester Polytechnic Institute
Date Created:: 2019-04-23
Resource Type:: Major Qualifying Project

Correlate Analyses for Acutely Infected HIV Individuals: Natural Disease Control Study

Creator:: Dickinson, Kylie Ann
Advisor:: Ryder, Elizabeth F.
Publisher:: Worcester Polytechnic Institute
Date Created:: 2019-04-25
Resource Type:: Major Qualifying Project

Tissue Preservation Through Cryogenic Methods

Creator:: Schwamb, John Patrick, Howell-Munson, Alicia Nadine, Dettloff, Kristen, and Torres Yabar, Alessandra Sofia
Advisor:: Ryder, Elizabeth F., Rolle, Marsha Whitney, and Heilman, Destin
Publisher:: Worcester Polytechnic Institute
Date Created:: 2019-04-25
Resource Type:: Major Qualifying Project

Prioritizing Clinical Genomes

Keyword:: algorithm, variant, comparative analysis, and genomics
Creator:: Regan, Ilona M.
Advisor:: Korkin, Dmitry
Publisher:: Worcester Polytechnic Institute
Date Created:: 2020-10-16
Resource Type:: Major Qualifying Project

Inferring distribution of material properties in wall structures of tip-growing cell

Creator:: Deng, Yaqi
Advisor:: Wu, Min and Vidali, Luis
Publisher:: Worcester Polytechnic Institute
Date Created:: 2020-12-10
Resource Type:: Major Qualifying Project

Transcriptomics Analysis of Pseudomonas Putida for Implementation of Soil Microbial Biosensor

Creator:: Harding, Kyle R.
Advisor:: Young, Eric Mosher and Farny, Natalie
Publisher:: Worcester Polytechnic Institute
Date Created:: 2021-05-06
Resource Type:: Major Qualifying Project

Curating a Pipeline for Analyzing and Visualizing Gene Expression Data in Psychiatric Disorders

Keyword:: Single Cell Sequencing, Autism, Psychiatric Disorders, and Epigenetics
Creator:: Shedd, Nicole
Advisor:: Ryder, Elizabeth F. and Nechipurenko, Inna
Publisher:: Worcester Polytechnic Institute
Date Created:: 2021-05-05
Resource Type:: Major Qualifying Project

Viral Pathogenicity with AI

Keyword:: Bioinformatics and Machine Learning
Creator:: Simpson, Parker
Advisor:: Korkin, Dmitry
Publisher:: Worcester Polytechnic Institute
Date Created:: 2021-08-16
Resource Type:: Major Qualifying Project

Using AI to Predict Protein Structural Stability

Creator:: Sultan, Mir
Advisor:: Korkin, Dmitry
Publisher:: Worcester Polytechnic Institute
Date Created:: 2021-08-13
Resource Type:: Major Qualifying Project

Exploring the Domestication of Foxes

Keyword:: Domestication Syndrome, Hybridization, Fox, OER, and Domestication
Creator:: Mora, Samantha, Casserly, Matthew , Rudnik, Katelin , Nagy, Matthew , and Garcia, Sabine
Advisor:: Bakermans, Marja
Publisher:: Worcester Polytechnic Institute
Date Created:: 2022
Resource Type:: Report

Direct RNA Sequencing and Transcriptomic Analysis of Pseudomonas putida

Keyword:: Direct RNA Sequencing, Pipeline, Bacteria, Python, Soil Environment, and Transcriptomics
Creator:: Voltmer, Stokley and Grant, Maia
Advisor:: Young, Eric Mosher and Farny, Natalie
Publisher:: Worcester Polytechnic Institute
Date Created:: 2022-04-29
Resource Type:: Major Qualifying Project

Using Proximity Labeling to Characterize the Protein Neighborhood of the Moss Exocyst Complex and Myosin XI

Keyword:: TurboID, Moss, Proximity Labeling, Biotinylation, Exocyst, and Physcomitrium Patens
Creator:: Mora, Samantha, Musser, Emily, and Tatone, Julia
Advisor:: Vidali, Luis and Ryder, Elizabeth F.
Publisher:: Worcester Polytechnic Institute
Date Created:: 2022-04-28
Resource Type:: Major Qualifying Project

Moving Forward: Lessons Learned by the Federal Government From the Medical Equipment Supply Chain Crisis During the Covid-19 Pandemic and the Path to Supply Chain Resiliency

Keyword:: International Trade, Medical Equipment, Supply Chain, United States Government, Covid-19, and Healthcare
Creator:: Baker, Emily
Advisor:: Galante, John S.
Publisher:: Worcester Polytechnic Institute
Date Created:: 2022-04-28
Resource Type:: Major Qualifying Project

Expanding Beecology Project’s Web Application for Butterfly Observations

Keyword:: Web application, Pollinator decline, and Beecology
Creator:: Pecorale, Aidan and Poulos, Jared
Advisor:: Ryder, Elizabeth F. and Ruiz, Carolina
Publisher:: Worcester Polytechnic Institute
Date Created:: 2022-04-28
Resource Type:: Major Qualifying Project

Existing and Inducible Antibiotic Resistance in Worcester, Massachusetts

Keyword:: Soil, Antibiotics, Antibiotic Resistance, Metabolite, and Bacteria
Creator:: McBrine, Rachel and Baker, Emily
Advisor:: Buckholt, Michael Allan and Ryder, Elizabeth F.
Publisher:: Worcester Polytechnic Institute
Date Created:: 2022-04-28
Resource Type:: Major Qualifying Project

Multi-cell RNA-Seq: A computational approach

Keyword:: Transcriptomics, BCB, RNA Seq, Bioinformatics, Single Cell RNA Seq, and Bulk RNA Seq
Creator:: Cazaubiel, Jules and Tourtillott, Nicholas
Advisor:: Korkin, Dmitry
Publisher:: Worcester Polytechnic Institute
Date Created:: 2022-04-28
Resource Type:: Major Qualifying Project

Genetics of Muscular Dystrophy

Keyword:: Machine Learning, Linear Regression, and Muscular Dystrophy
Creator:: Moy, Justin
Advisor:: Ryder, Elizabeth F.
Publisher:: Worcester Polytechnic Institute
Date Created:: 2022-04-27
Resource Type:: Major Qualifying Project

The Clever Critters Podcast: Exploring Animal Cognition, Intelligence, and Tool Use

Keyword:: Tool Use, Intelligence, and Cognition
Creator:: Govani, Samay, Thomas, Anna, Demers, Maline, and Bernabel, Genesis
Advisor:: Bakermans, Marja
Publisher:: Worcester Polytechnic Institute
Date Created:: 2023
Resource Type:: Other

Using Protein Interaction Modeling to Understand Exocyst Assembly and Tethering Dynamics in Exocytosis

Creator:: Byrne, Chloe
Advisor:: Vidali, Luis
Publisher:: Worcester Polytechnic Institute
Date Created:: 2023-05-01
Resource Type:: Major Qualifying Project

Modeling the Microbiome

Creator:: Datta, David
Advisor:: Ryder, Elizabeth F. and Rao, Reeta Prusty
Publisher:: Worcester Polytechnic Institute
Date Created:: 2023-04-29
Resource Type:: Major Qualifying Project

Defining the role of a conserved G protein activator RIC-8 in neuronal heat shock response

Keyword:: Bioinformatics, Heat shock, Heat stress, Primary cilia, C. elegans, and RIC-8
Creator:: LaBombard, Adam
Advisor:: Ryder, Elizabeth F. and Nechipurenko, Inna
Publisher:: Worcester Polytechnic Institute
Date Created:: 2023-04-27
Resource Type:: Major Qualifying Project

Computational and Data Science Tools for Environmental Science: Butterflies

Keyword:: Butterfly Populations, Data Visualization, Beecology, Data Analysis, Butterfly Observation, and Pollinator Decline
Creator:: Strano, Sophia
Advisor:: Ruiz, Carolina and Ryder, Elizabeth F.
Publisher:: Worcester Polytechnic Institute
Date Created:: 2023-04-23
Resource Type:: Major Qualifying Project

Development of a Novel scRNAseq Pipeline and Analysis of Influenza-Infected Mouse Lung Cells

Keyword:: scRNAseq and disease tolerance
Creator:: Raven, Emmaline
Advisor:: Ryder, Elizabeth F.
Publisher:: Worcester Polytechnic Institute
Date Created:: 2023-08-14
Resource Type:: Major Qualifying Project

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