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Korkin, Dmitry
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Computer Vision Analysis of in Vitro Biological Neural Network Connectivity
Creator:
Fongeallaz, Connor
and
Pylypenko, Taras
Advisor:
Korkin, Dmitry
and
Roberts, Louis Anthony
Publisher:
Worcester Polytechnic Institute
Date Created:
2024-08-09
Resource Type:
Major Qualifying Project
Westborough High School Mental Health Predictive Analyses
Creator:
Mraz, Olivia
Advisor:
Lopez, Richard
,
Nephew, Benjamin
,
Korkin, Dmitry
, and
Rodriguez, Angela C Incollingo
Publisher:
Worcester Polytechnic Institute
Date Created:
2024-08-13
Resource Type:
Interactive Qualifying Project
Westborough High School Mental Health Predictive Analyses
Keyword:
Anxiety
,
Depression
,
Predictive Analysis
,
Mental Health
, and
Machine Learning
Creator:
Borghesani, Brian
Advisor:
Korkin, Dmitry
,
Lopez, Richard
,
Nephew, Benjamin
, and
Rodriguez, Angela C Incollingo
Publisher:
Worcester Polytechnic Institute
Date Created:
2024-08-24
Resource Type:
Interactive Qualifying Project
Anchored to the Gene: Sketching topograpHi-C maps of the Genome
Keyword:
bioinformatics
,
biostatistics
,
multiomics
,
Hi-C
, and
data visualization
Creator:
Tourtellotte, Jocelyn
Advisor:
Korkin, Dmitry
and
Walcott, Sam
Publisher:
Worcester Polytechnic Institute
Date Created:
2024-05-05
Resource Type:
Dissertation
Degree:
PhD
Unit (Department):
Bioinformatics & Computational Biology
Computational modeling of mRNA degradation in Mycolicibacterium smegmatis
Keyword:
RNase E cleavage
,
mRNA degradation
,
Transcript features
,
RNAseq
,
Mycolicibacterium smegmatis
, and
Machine learning
Creator:
Sun, Huaming
Advisor:
Korkin, Dmitry
and
Shell, Scarlet
Publisher:
Worcester Polytechnic Institute
Date Created:
2024-05-04
Resource Type:
Dissertation
Degree:
PhD
Unit (Department):
Bioinformatics & Computational Biology
Deciphering the Role of Alternative Splicing in Molecular Assemblies: Are Immortalized Cell Lines Good Data Sources?
Keyword:
structure
,
conservation
,
alternative splicing
, and
molecular assembly
Creator:
Bao, Yue
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2024-05-04
Resource Type:
Thesis
Degree:
MS
Unit (Department):
Bioinformatics & Computational Biology
Exploring end-to-end sequence to sequence ensemble model for predicting RNA secondary structure
Creator:
Ammartayakun, Aukkawut
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2022-05-05
Resource Type:
Major Qualifying Project
Deep Learning Analysis of Neuroimaging (MRI) Data
Creator:
Le, Vu
Advisor:
Korkin, Dmitry
and
Nephew, Benjamin
Publisher:
Worcester Polytechnic Institute
Date Created:
2024-03-13
Resource Type:
Interactive Qualifying Project
Westborough High School Mental Health Predictive Analyses
Creator:
Kresge, Ben
Advisor:
Korkin, Dmitry
,
Nephew, Benjamin
, and
Rodriguez, Angela C Incollingo
Publisher:
Worcester Polytechnic Institute
Date Created:
2024-04-24
Resource Type:
Major Qualifying Project
Westborough High School Mental Health Predictive Analyses
Creator:
Ammartayakun, Aukkawut
Advisor:
Nephew, Benjamin
,
Lopez, Richard
,
Korkin, Dmitry
, and
Rodriguez, Angela C Incollingo
Publisher:
Worcester Polytechnic Institute
Date Created:
2024-04-24
Resource Type:
Interactive Qualifying Project
Machine Learning Analysis of Neuroimaging (MRI) Data to Distinguish Patients with Focal Cortical Dysplasia Type II
Keyword:
Deep Learning
,
MRI
,
Machine Learning
, and
Python
Creator:
Golden, Jonathan
and
Kandasamy, Vivek
Advisor:
Korkin, Dmitry
,
Rodriguez, Angela C Incollingo
, and
Nephew, Benjamin
Publisher:
Worcester Polytechnic Institute
Date Created:
2024-04-25
Resource Type:
Major Qualifying Project
BranchBot: Autonomous Quadcopter for Branch Attachment
Keyword:
Cable-driven Mechanism
,
Bio-inspired
,
Machine Learning
, and
Passive Actuation
Creator:
Altheimer, Suzanne
,
Dean, Cooper
,
Kerekon, Andrew
, and
Boyle, Keelan
Advisor:
Rosendo, Andre
,
Mangoubi, Oren Rami
,
Krueger, Robert
, and
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2024-04-25
Resource Type:
Major Qualifying Project
Deep Learning Analysis of Neuroimaging (MRI) Data
Creator:
Shields, Collin
Advisor:
Nephew, Benjamin
and
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2024-03-22
Resource Type:
Interactive Qualifying Project
Deep Learning Analysis on Neuroimaging Data to Distinguish Anxiety and Depression Diagnoses in Adolescents
Creator:
Kongsomjit, Pitipat
and
Deckers, Olivia
Advisor:
Nephew, Benjamin
,
Korkin, Dmitry
, and
Rodriguez, Angela C Incollingo
Publisher:
Worcester Polytechnic Institute
Date Created:
2024-03-22
Resource Type:
Major Qualifying Project
Westborough High School Mental Health Predictive Analyses
Keyword:
Treatment
,
Mental Health
,
Machine Learning
,
Depression
,
Predictive Analysis
, and
Anxiety
Creator:
Lo, Wesley
Advisor:
Korkin, Dmitry
,
Rodriguez, Angela C Incollingo
, and
Nephew, Benjamin
Publisher:
Worcester Polytechnic Institute
Date Created:
2023-04-26
Resource Type:
Major Qualifying Project
Computer simulations of vesicle transport in plant cells
Keyword:
cytosim
and
computer simulation
Creator:
Zarate, Jyan
Advisor:
Vidali, Luis
and
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2022-10-04
Resource Type:
Major Qualifying Project
Multi-cell RNA-Seq: A computational approach
Keyword:
Transcriptomics
,
BCB
,
RNA Seq
,
Bioinformatics
,
Single Cell RNA Seq
, and
Bulk RNA Seq
Creator:
Cazaubiel, Jules
and
Tourtillott, Nicholas
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2022-04-28
Resource Type:
Major Qualifying Project
Biological Discovery via Data Science: Multigranular Artificial Intelligence Approaches for Cells, Cerebra and Cruise Ships
Keyword:
Bioinformatics
,
Single-cell Transcriptomics
,
Artificial Intelligence
,
Data Science
,
Infectious Disease Epidemiology
, and
Neuropsychiatry
Creator:
Srinivasan, Suhas
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2022-03-01
Resource Type:
Dissertation
Degree:
PhD
Unit (Department):
Data Science
Modern Computer Science Approaches in Biology: From Predicting Molecular Functions to Modeling Protein Structure
Creator:
Narykov, Oleksandr
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2022-04-27
Resource Type:
Dissertation
Degree:
PhD
Unit (Department):
Computer Science
Using AI to Predict Protein Structural Stability
Creator:
Sultan, Mir
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2021-08-13
Resource Type:
Major Qualifying Project
Viral Pathogenicity with AI
Keyword:
Bioinformatics
and
Machine Learning
Creator:
Simpson, Parker
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2021-08-16
Resource Type:
Major Qualifying Project
Patterns of Viral Signal Peptide Sequences and their Corresponding Hosts
Keyword:
Virus
,
Viral-host evolution
,
Phylogeny
, and
Signal peptides
Creator:
Le, Ann-Elizabeth V.
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2020-09-20
Resource Type:
Thesis
Degree:
MS
Unit (Department):
Bioinformatics & Computational Biology
A landscape of population-specific variation effects on ligand binding site in the healthy population
Creator:
Sun, Mo
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2021-04-28
Resource Type:
Thesis
Degree:
MS
Unit (Department):
Bioinformatics & Computational Biology
ELUCIDATION OF PERSISTENT MUTATIONAL LANDSCAPE IN SARS-CoV-2 MAIN PROTEASE: A STRUCTURAL BIOINFORMATICS ANALYSIS
Keyword:
SARS-CoV-2, Main Protease, spatial-temporal, mutation, persistent, selection, molecular dynamics
Creator:
Mkandawire, Winnie
Advisor:
Korkin, Dmitry
and
Schiffer, Celia
Publisher:
Worcester Polytechnic Institute
Date Created:
2021-05-06
Resource Type:
Thesis
Degree:
MS
Unit (Department):
Bioinformatics & Computational Biology
Analysis of the Relationship Between Co-localization of Proteins in Protein Assemblies and Protein Proximity in 3-D Space
Creator:
Xie, Longsheng
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2020-05-18
Resource Type:
Thesis
Degree:
MS
Unit (Department):
Bioinformatics & Computational Biology
Prioritizing Clinical Genomes
Keyword:
algorithm
,
variant
,
comparative analysis
, and
genomics
Creator:
Regan, Ilona M.
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2020-10-16
Resource Type:
Major Qualifying Project
In Silico Edgetic Profiling and Network Analysis of Human Genetic Variants, with an Application to Disease Module Detection
Keyword:
Next Generation Sequencing
Creator:
Cui, Hongzhu
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2020-05-18
Resource Type:
Dissertation
Degree:
PhD
Unit (Department):
Bioinformatics & Computational Biology
PubMed AuthorMap: A Study of Research Collaboration in the Life Science Fields
Creator:
Moulaison, Amanda Wylie
and
Northcott, Haylea Tricia
Advisor:
Ryder, Elizabeth F.
and
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2019-04-23
Resource Type:
Major Qualifying Project
Award:
Provost's MQP Award
Sound Signal Coalescence
Creator:
Xiao, Jeffrey Yangfeng
,
Lee, Ryan Tarango
, and
Morris, Tyler Drew
Advisor:
Bitar, Stephen John
and
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2019-07-25
Resource Type:
Major Qualifying Project
Tracking DNA Damage Repair in Cancerous Cells
Creator:
Nicolella, Alyssa Alexandra
and
Corace, Michael L.
Advisor:
Manning, Amity L.
and
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2020-05-18
Resource Type:
Major Qualifying Project
The Creation and Utilization of Bioinformatics Tools to Study Patterns of the Presented HIV Immunopeptidome
Creator:
Le, Ann-Elizabeth V.
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2020-05-17
Resource Type:
Major Qualifying Project
Predicting DNA Damage in Fluorescent Imaging
Creator:
McDonough, Daniel
and
Vadivazhagu, Surya
Advisor:
Manning, Amity L.
and
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2020-05-06
Resource Type:
Major Qualifying Project
Studying inter- and intra-tumor heterogeneity of triple-negative breast cancer
Keyword:
unsupervised learning
,
clustering
,
TNBC
, and
cancer
Creator:
Leshchyk, Anastasia
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2019-04-28
Resource Type:
Thesis
Degree:
MS
Unit (Department):
Bioinformatics & Computational Biology
A mixed reality framework for surgical navigation: approach and preliminary results
Keyword:
Mixed Reality
,
Minimally Invasive Surgery
, and
Image Guidance
Creator:
Murlidaran, Shravan
Advisor:
Fichera, Loris
and
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2019-04-25
Resource Type:
Thesis
Degree:
MS
Unit (Department):
Robotics Engineering
Propensity of Endogenous Alternative Splicing to Mediate Mutative Damage
Keyword:
Mutation
,
Alternative Splicing
,
Cancer
,
mRNAseq
,
Statistics
, and
Machine Learning
Creator:
Lutz, Ashley
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2019-04-25
Resource Type:
Thesis
Degree:
MS
Unit (Department):
Bioinformatics & Computational Biology
Boosting Gene Expression Clustering with System-Wide Biological Information and Deep Learning
Keyword:
community detection
,
biological network
,
robust autoencoder
,
deep learning
, and
gene expression clustering
Creator:
Cui, Hongzhu
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2019-04-24
Resource Type:
Thesis
Degree:
MS
Unit (Department):
Computer Science
Leveraging Omics Data to Expand the Value and Understanding of Alternative Splicing
Keyword:
Omics
and
Alternative Splicing
Creator:
Johnson, Nathan T.
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2019-04-08
Resource Type:
Dissertation
Degree:
PhD
Unit (Department):
Bioinformatics & Computational Biology
Augmented DIAMOnD: A Method for Improving Disease Networks Among Human Genes
Creator:
Specht, Kevin Brian
Advisor:
Korkin, Dmitry
and
Wu, Zheyang
Publisher:
Worcester Polytechnic Institute
Date Created:
2017-04-27
Resource Type:
Major Qualifying Project
Disease Containment Protocols for Confined Environments
Creator:
Zapatka, Zachary J
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2016-02-02
Resource Type:
Major Qualifying Project
HoloNet: Holographic Networks
Creator:
Van Rensselaer, William Alexander
,
Sawin, Jonathan Robert
, and
Margvelashvili, Vakhtang
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2017-05-04
Resource Type:
Major Qualifying Project
MOLECULAR EVOLUTION OF EBOLA: A BIOINFORMATICS APPROACH
Creator:
Zhao, Yifan
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2015-09-11
Resource Type:
Major Qualifying Project
New Drugs for An Old Disease: Discovery and Understanding of Antibiotics and Oxidative Stress Effects on the M. smegmatis Transcriptome
Creator:
Murphy, Rachel Lee
,
Tegan, Caeli
, and
Maffucci, Casey
Advisor:
Buckholt, Michael Allan
,
Shell, Scarlet
, and
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2018-04-26
Resource Type:
Major Qualifying Project
New Drugs for an Old Disease: Discovery and Understanding of Antibiotics and Oxidative Stress on the M. smegmatis Transcriptome
Creator:
Maffucci, Casey Catherine
,
Tegan, Caeli C
, and
Murphy, Rachel
Advisor:
Buckholt, Michael Allan
,
Korkin, Dmitry
, and
Shell, Scarlet
Publisher:
Worcester Polytechnic Institute
Date Created:
2018-04-26
Resource Type:
Major Qualifying Project
Gene fusions in cancer: Classification of fusion events and regulation patterns of fusion pathway neighbors
Keyword:
Cancer
,
semi-supervised machine learning
,
gene fusion
,
Machine Learning
, and
chromosomal abnormalities
Creator:
Hughes, Katelyn
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2016-05-05
Resource Type:
Thesis
Degree:
MS
Unit (Department):
Bioinformatics & Computational Biology
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Altheimer, Suzanne
1
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2
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1
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1
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1
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2
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1
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1
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1
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1
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1
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Applied Mathematics
1
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10
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3
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9
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2
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12
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2
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1
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1
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44
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3
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9
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7
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6
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https://creativecommons.org/licenses/by/4.0/
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Provost's MQP Award
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