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Filtering by: Orcid https%3A%2F%2Forcid.org%2F0000-0002-5221-863X Contributor Korkin, Dmitry Unit (Department) Bioinformatics & Computational Biology Resource type Thesis

1. A landscape of population-specific variation effects on ligand binding site in the healthy population

Creator:: Sun, Mo
Advisor:: Korkin, Dmitry
Publisher:: Worcester Polytechnic Institute
Date Created:: 2021-04-28
Resource Type:: Thesis
Degree:: MS
Unit (Department):: Bioinformatics & Computational Biology

2. Analysis of the Relationship Between Co-localization of Proteins in Protein Assemblies and Protein Proximity in 3-D Space

Creator:: Xie, Longsheng
Advisor:: Korkin, Dmitry
Publisher:: Worcester Polytechnic Institute
Date Created:: 2020-05-18
Resource Type:: Thesis
Degree:: MS
Unit (Department):: Bioinformatics & Computational Biology

3. Deciphering the Role of Alternative Splicing in Molecular Assemblies: Are Immortalized Cell Lines Good Data Sources?

Keyword:: structure, conservation, alternative splicing, and molecular assembly
Creator:: Bao, Yue
Advisor:: Korkin, Dmitry
Publisher:: Worcester Polytechnic Institute
Date Created:: 2024-05-04
Resource Type:: Thesis
Degree:: MS
Unit (Department):: Bioinformatics & Computational Biology

4. Sleep Duration and Quality Assessment using Smartphones

Creator:: Peng, Yuxiao
Advisor:: Agu, Emmanuel O.
Publisher:: Worcester Polytechnic Institute
Date Created:: 2020-05-18
Resource Type:: Thesis
Degree:: MS
Unit (Department):: Bioinformatics & Computational Biology

5. Patterns of Viral Signal Peptide Sequences and their Corresponding Hosts

Keyword:: Virus, Viral-host evolution, Phylogeny, and Signal peptides
Creator:: Le, Ann-Elizabeth V.
Advisor:: Korkin, Dmitry
Publisher:: Worcester Polytechnic Institute
Date Created:: 2020-09-20
Resource Type:: Thesis
Degree:: MS
Unit (Department):: Bioinformatics & Computational Biology

6. ELUCIDATION OF PERSISTENT MUTATIONAL LANDSCAPE IN SARS-CoV-2 MAIN PROTEASE: A STRUCTURAL BIOINFORMATICS ANALYSIS

Keyword:: SARS-CoV-2, Main Protease, spatial-temporal, mutation, persistent, selection, molecular dynamics
Creator:: Mkandawire, Winnie
Advisor:: Korkin, Dmitry and Schiffer, Celia
Publisher:: Worcester Polytechnic Institute
Date Created:: 2021-05-06
Resource Type:: Thesis
Degree:: MS
Unit (Department):: Bioinformatics & Computational Biology

7. Simulations of Different P-values Combination Methods Using SNPs on Diverse Biology Levels

Keyword:: statistical power, haplotype block, p-value combination methods, Omni-TFisher, and GEFOS
Creator:: Zhang, Ruosi
Advisor:: Wu, Zheyang
Publisher:: Worcester Polytechnic Institute
Date Created:: 2019-05-30
Resource Type:: Thesis
Degree:: MS
Unit (Department):: Bioinformatics & Computational Biology

8. Studying inter- and intra-tumor heterogeneity of triple-negative breast cancer

Keyword:: unsupervised learning, clustering, TNBC, and cancer
Creator:: Leshchyk, Anastasia
Advisor:: Korkin, Dmitry
Publisher:: Worcester Polytechnic Institute
Date Created:: 2019-04-28
Resource Type:: Thesis
Degree:: MS
Unit (Department):: Bioinformatics & Computational Biology

9. Propensity of Endogenous Alternative Splicing to Mediate Mutative Damage

Keyword:: Mutation, Alternative Splicing, Cancer, mRNAseq, Statistics, and Machine Learning
Creator:: Lutz, Ashley
Advisor:: Korkin, Dmitry
Publisher:: Worcester Polytechnic Institute
Date Created:: 2019-04-25
Resource Type:: Thesis
Degree:: MS
Unit (Department):: Bioinformatics & Computational Biology

10. Gene fusions in cancer: Classification of fusion events and regulation patterns of fusion pathway neighbors

Keyword:: Cancer, semi-supervised machine learning, gene fusion, Machine Learning, and chromosomal abnormalities
Creator:: Hughes, Katelyn
Advisor:: Korkin, Dmitry
Publisher:: Worcester Polytechnic Institute
Date Created:: 2016-05-05
Resource Type:: Thesis
Degree:: MS
Unit (Department):: Bioinformatics & Computational Biology