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Shell, Scarlet
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Computational modeling of mRNA degradation in Mycolicibacterium smegmatis
Keyword:
RNase E cleavage
,
mRNA degradation
,
Transcript features
,
RNAseq
,
Mycolicibacterium smegmatis
, and
Machine learning
Creator:
Sun, Huaming
Advisor:
Korkin, Dmitry
and
Shell, Scarlet
Publisher:
Worcester Polytechnic Institute
Date Created:
2024-05-04
Resource Type:
Dissertation
Degree:
PhD
Unit (Department):
Bioinformatics & Computational Biology
Evolution of antibiotic resistance in mycobacteria
Creator:
Lemay, Elizabeth
Advisor:
Shell, Scarlet
Publisher:
Worcester Polytechnic Institute
Date Created:
2023-08-11
Resource Type:
Major Qualifying Project
The influence of codon content on gene expression in mycobacteria
Keyword:
Translation efficiency
,
Mycobacteria
,
Transcript stability
,
Tuberculosis
,
Mycolicibacterium smegmatis
, and
Gene expression
Creator:
Atkins, Olivia
Advisor:
Shell, Scarlet
Publisher:
Worcester Polytechnic Institute
Date Created:
2023-04-26
Resource Type:
Major Qualifying Project
The Effects of mRNA Abundance on Degradation Rate
Keyword:
biovisualization
,
metabolic pathways
,
mRNA abundance
,
gene expression
,
mRNA half-life
, and
Mycolicibacterium smegmatis
Creator:
Le, Van
and
Orszulak, Adrian
Advisor:
Shell, Scarlet
and
Harrison, Lane T.
Publisher:
Worcester Polytechnic Institute
Date Created:
2022-04-28
Resource Type:
Major Qualifying Project
The Impact of Ribosome Binding Site Sequences on Translation in Mycobacteria
Keyword:
Ribosome Binding Site
,
M. smegmatis
,
Translation
,
Shine-Dalgarno
, and
Mycobacteria
Creator:
Masiello, Catherine
Advisor:
Shell, Scarlet
Publisher:
Worcester Polytechnic Institute
Date Created:
2022-04-29
Resource Type:
Major Qualifying Project
Cu+-importing Phenotypes of ΔCuiT strain and the Expression Optimization of P1B-ATPases in Pseudomonas aeruginosa
Keyword:
Phenotype
,
CuiT
,
Expression optimization
,
Copper importer
,
ATPases
, and
Pseudomonas aeruginosa
Creator:
Xu, Cheng
Advisor:
Argüello, José M.
,
Kaminski, George A.
,
Shell, Scarlet
, and
Dempski, Robert E.
Publisher:
Worcester Polytechnic Institute
Date Created:
2021-10-01
Resource Type:
Thesis
Degree:
MS
Unit (Department):
Chemistry & Biochemistry
The role of RNase E in Mycolicibacterium smegmatis
Keyword:
mRNA cleavage
,
RNA degradosome
,
mRNA degradation
,
Mycolicibacterium smegmatis
,
Transcriptome
, and
RNase E
Creator:
Zhou, Ying
Advisor:
Shell, Scarlet
Publisher:
Worcester Polytechnic Institute
Date Created:
2022-01-25
Resource Type:
Dissertation
Degree:
PhD
Unit (Department):
Biology & Biotechnology
Investigating the relationship between mRNA degradation rates and secondary structure in mycobacteria
Creator:
Kelly, Jessica M.
Advisor:
Shell, Scarlet
Publisher:
Worcester Polytechnic Institute
Date Created:
2021-05-03
Resource Type:
Major Qualifying Project
Award:
Provost's MQP Award
RNase III in M. smegmatis
Keyword:
RNase III
,
rRNA
,
mRNA
, and
Mycobacterium smegmatis
Creator:
Joubran, Samantha R.
Advisor:
Shell, Scarlet
and
Argüello, José M.
Publisher:
Worcester Polytechnic Institute
Date Created:
2021-05-06
Resource Type:
Major Qualifying Project
Mechanisms of Differential Expression of ESX-1 Secretion System Genes in Mycobacterium smegmatis
Keyword:
quantitative PCR
,
Transcription start site
,
Cleavage site
,
Tuberculosis
,
ESX-1
, and
5' RACE
Creator:
Peters, Ryan G.
Advisor:
Shell, Scarlet
Publisher:
Worcester Polytechnic Institute
Date Created:
2021-05-06
Resource Type:
Major Qualifying Project
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