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Filtering by: Advisor Korkin, Dmitry Publisher Worcester Polytechnic Institute Resource type Thesis

1. Patterns of Viral Signal Peptide Sequences and their Corresponding Hosts

Keyword:: Virus, Viral-host evolution, Phylogeny, and Signal peptides
Creator:: Le, Ann-Elizabeth V.
Advisor:: Korkin, Dmitry
Publisher:: Worcester Polytechnic Institute
Date Created:: 2020-09-20
Resource Type:: Thesis
Degree:: MS
Unit (Department):: Bioinformatics & Computational Biology

2. A landscape of population-specific variation effects on ligand binding site in the healthy population

Creator:: Sun, Mo
Advisor:: Korkin, Dmitry
Publisher:: Worcester Polytechnic Institute
Date Created:: 2021-04-28
Resource Type:: Thesis
Degree:: MS
Unit (Department):: Bioinformatics & Computational Biology

3. ELUCIDATION OF PERSISTENT MUTATIONAL LANDSCAPE IN SARS-CoV-2 MAIN PROTEASE: A STRUCTURAL BIOINFORMATICS ANALYSIS

Keyword:: SARS-CoV-2, Main Protease, spatial-temporal, mutation, persistent, selection, molecular dynamics
Creator:: Mkandawire, Winnie
Advisor:: Korkin, Dmitry and Schiffer, Celia
Publisher:: Worcester Polytechnic Institute
Date Created:: 2021-05-06
Resource Type:: Thesis
Degree:: MS
Unit (Department):: Bioinformatics & Computational Biology

4. Analysis of the Relationship Between Co-localization of Proteins in Protein Assemblies and Protein Proximity in 3-D Space

Creator:: Xie, Longsheng
Advisor:: Korkin, Dmitry
Publisher:: Worcester Polytechnic Institute
Date Created:: 2020-05-18
Resource Type:: Thesis
Degree:: MS
Unit (Department):: Bioinformatics & Computational Biology

5. Studying inter- and intra-tumor heterogeneity of triple-negative breast cancer

Keyword:: unsupervised learning, clustering, TNBC, and cancer
Creator:: Leshchyk, Anastasia
Advisor:: Korkin, Dmitry
Publisher:: Worcester Polytechnic Institute
Date Created:: 2019-04-28
Resource Type:: Thesis
Degree:: MS
Unit (Department):: Bioinformatics & Computational Biology

6. A mixed reality framework for surgical navigation: approach and preliminary results

Keyword:: Mixed Reality, Minimally Invasive Surgery, and Image Guidance
Creator:: Murlidaran, Shravan
Advisor:: Fichera, Loris and Korkin, Dmitry
Publisher:: Worcester Polytechnic Institute
Date Created:: 2019-04-25
Resource Type:: Thesis
Degree:: MS
Unit (Department):: Robotics Engineering

7. Propensity of Endogenous Alternative Splicing to Mediate Mutative Damage

Keyword:: Mutation, Alternative Splicing, Cancer, mRNAseq, Statistics, and Machine Learning
Creator:: Lutz, Ashley
Advisor:: Korkin, Dmitry
Publisher:: Worcester Polytechnic Institute
Date Created:: 2019-04-25
Resource Type:: Thesis
Degree:: MS
Unit (Department):: Bioinformatics & Computational Biology

8. Boosting Gene Expression Clustering with System-Wide Biological Information and Deep Learning

Keyword:: community detection, biological network, robust autoencoder, deep learning, and gene expression clustering
Creator:: Cui, Hongzhu
Advisor:: Korkin, Dmitry
Publisher:: Worcester Polytechnic Institute
Date Created:: 2019-04-24
Resource Type:: Thesis
Degree:: MS
Unit (Department):: Computer Science

9. Gene fusions in cancer: Classification of fusion events and regulation patterns of fusion pathway neighbors

Keyword:: Cancer, semi-supervised machine learning, gene fusion, Machine Learning, and chromosomal abnormalities
Creator:: Hughes, Katelyn
Advisor:: Korkin, Dmitry
Publisher:: Worcester Polytechnic Institute
Date Created:: 2016-05-05
Resource Type:: Thesis
Degree:: MS
Unit (Department):: Bioinformatics & Computational Biology