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Filtering by: Contributor Korkin, Dmitry Remove constraint Contributor: Korkin, Dmitry Unit (Department) Bioinformatics & Computational Biology Remove constraint Unit (Department): Bioinformatics & Computational Biology

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Anchored to the Gene: Sketching topograpHi-C maps of the Genome

Keyword:

bioinformatics, biostatistics, multiomics, Hi-C, and data visualization

Creator:

Tourtellotte, Jocelyn

Advisor:

Korkin, Dmitry and Walcott, Sam

Publisher:

Worcester Polytechnic Institute

Date Created:

2024-05-05

Resource Type:

Dissertation

Degree:

PhD

Unit (Department):

Bioinformatics & Computational Biology
Computational modeling of mRNA degradation in Mycolicibacterium smegmatis

Keyword:

RNase E cleavage, mRNA degradation, Transcript features, RNAseq, Mycolicibacterium smegmatis, and Machine learning

Creator:

Sun, Huaming

Advisor:

Korkin, Dmitry and Shell, Scarlet

Publisher:

Worcester Polytechnic Institute

Date Created:

2024-05-04

Resource Type:

Dissertation

Degree:

PhD

Unit (Department):

Bioinformatics & Computational Biology
Deciphering the Role of Alternative Splicing in Molecular Assemblies: Are Immortalized Cell Lines Good Data Sources?

Keyword:

structure, conservation, alternative splicing, and molecular assembly

Creator:

Bao, Yue

Advisor:

Korkin, Dmitry

Publisher:

Worcester Polytechnic Institute

Date Created:

2024-05-04

Resource Type:

Thesis

Degree:

MS

Unit (Department):

Bioinformatics & Computational Biology
Modeling Approaches to Understanding Bumblebee Behavior and Population Decline

Keyword:

Simulation, Pollinator Decline, Bumblebees, Memory, Deep Learning, and Agent-based model

Creator:

Heath, Kevin

Advisor:

Ryder, Elizabeth F.

Publisher:

Worcester Polytechnic Institute

Date Created:

2022-08-12

Resource Type:

Dissertation

Degree:

PhD

Unit (Department):

Bioinformatics & Computational Biology
Sleep Duration and Quality Assessment using Smartphones

Creator:

Peng, Yuxiao

Advisor:

Agu, Emmanuel O.

Publisher:

Worcester Polytechnic Institute

Date Created:

2020-05-18

Resource Type:

Thesis

Degree:

MS

Unit (Department):

Bioinformatics & Computational Biology
Patterns of Viral Signal Peptide Sequences and their Corresponding Hosts

Keyword:

Virus, Viral-host evolution, Phylogeny, and Signal peptides

Creator:

Le, Ann-Elizabeth V.

Advisor:

Korkin, Dmitry

Publisher:

Worcester Polytechnic Institute

Date Created:

2020-09-20

Resource Type:

Thesis

Degree:

MS

Unit (Department):

Bioinformatics & Computational Biology
A landscape of population-specific variation effects on ligand binding site in the healthy population

Creator:

Sun, Mo

Advisor:

Korkin, Dmitry

Publisher:

Worcester Polytechnic Institute

Date Created:

2021-04-28

Resource Type:

Thesis

Degree:

MS

Unit (Department):

Bioinformatics & Computational Biology
ELUCIDATION OF PERSISTENT MUTATIONAL LANDSCAPE IN SARS-CoV-2 MAIN PROTEASE: A STRUCTURAL BIOINFORMATICS ANALYSIS

Keyword:

SARS-CoV-2, Main Protease, spatial-temporal, mutation, persistent, selection, molecular dynamics

Creator:

Mkandawire, Winnie

Advisor:

Korkin, Dmitry and Schiffer, Celia

Publisher:

Worcester Polytechnic Institute

Date Created:

2021-05-06

Resource Type:

Thesis

Degree:

MS

Unit (Department):

Bioinformatics & Computational Biology
Analysis of the Relationship Between Co-localization of Proteins in Protein Assemblies and Protein Proximity in 3-D Space

Creator:

Xie, Longsheng

Advisor:

Korkin, Dmitry

Publisher:

Worcester Polytechnic Institute

Date Created:

2020-05-18

Resource Type:

Thesis

Degree:

MS

Unit (Department):

Bioinformatics & Computational Biology
In Silico Edgetic Profiling and Network Analysis of Human Genetic Variants, with an Application to Disease Module Detection

Keyword:

Next Generation Sequencing

Creator:

Cui, Hongzhu

Advisor:

Korkin, Dmitry

Publisher:

Worcester Polytechnic Institute

Date Created:

2020-05-18

Resource Type:

Dissertation

Degree:

PhD

Unit (Department):

Bioinformatics & Computational Biology

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Creator

Bao, Yue1
Cui, Hongzhu1
Heath, Kevin1
Hughes, Katelyn1
Johnson, Nathan T.1
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Agu, Emmanuel O.1
Korkin, Dmitry12
Ryder, Elizabeth F.1
Schiffer, Celia1
Shell, Scarlet1
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Agu, Emmanuel O.1
Flaherty, Patrick1
Gegear, Robert J.1
Grunwald, David1
Harrison, Lane1
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Unit (Department)

Bioinformatics & Computational Biology[remove]15

Publisher

Worcester Polytechnic Institute15

Resource type

Thesis10
Dissertation5

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https://creativecommons.org/licenses/by-nc/4.0/2
https://creativecommons.org/licenses/by/4.0/2

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