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Bioinformatics & Computational Biology
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1.
Differential Equations and Data-Driven Methods for Modeling Microglial Cells During Ischemic Stroke
Keyword:
Model Identification
,
Parameter Estimation
,
Neuroinflammation
,
Microglial Cells
, and
Experimental Data
Creator:
Amato, Sara
Advisor:
Arnold, Andrea N.
Publisher:
Worcester Polytechnic Institute
Date Created:
2024-04-25
Resource Type:
Dissertation
Degree:
PhD
Unit (Department):
Bioinformatics & Computational Biology
2.
Anchored to the Gene: Sketching topograpHi-C maps of the Genome
Keyword:
bioinformatics
,
biostatistics
,
multiomics
,
Hi-C
, and
data visualization
Creator:
Tourtellotte, Jocelyn
Advisor:
Korkin, Dmitry
and
Walcott, Sam
Publisher:
Worcester Polytechnic Institute
Date Created:
2024-05-05
Resource Type:
Dissertation
Degree:
PhD
Unit (Department):
Bioinformatics & Computational Biology
3.
Computational modeling of mRNA degradation in Mycolicibacterium smegmatis
Keyword:
RNase E cleavage
,
mRNA degradation
,
Transcript features
,
RNAseq
,
Mycolicibacterium smegmatis
, and
Machine learning
Creator:
Sun, Huaming
Advisor:
Korkin, Dmitry
and
Shell, Scarlet
Publisher:
Worcester Polytechnic Institute
Date Created:
2024-05-04
Resource Type:
Dissertation
Degree:
PhD
Unit (Department):
Bioinformatics & Computational Biology
4.
Deciphering the Role of Alternative Splicing in Molecular Assemblies: Are Immortalized Cell Lines Good Data Sources?
Keyword:
structure
,
conservation
,
alternative splicing
, and
molecular assembly
Creator:
Bao, Yue
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2024-05-04
Resource Type:
Thesis
Degree:
MS
Unit (Department):
Bioinformatics & Computational Biology
5.
Lab vs Soil: The Transcriptome of Pseudomonas putida
Keyword:
Pseudomonas putida
,
Soil
,
Synthetic Biology
, and
Transcriptomics
Creator:
Voltmer, Stokley
Advisor:
Farny, Natalie
Publisher:
Worcester Polytechnic Institute
Date Created:
2023-12-15
Resource Type:
Thesis
Degree:
MS
Unit (Department):
Bioinformatics & Computational Biology
6.
Passive Brain-Computer Interfaces for Non-Medical Applications
Keyword:
brain-computer interface
,
education data mining
, and
non-invasive neuorimaging
Creator:
Howell-Munson, Alicia
Advisor:
Solovey, Erin
Publisher:
Worcester Polytechnic Institute
Date Created:
2023-04-27
Resource Type:
Dissertation
Degree:
PhD
Unit (Department):
Bioinformatics & Computational Biology
7.
Mathematical Modeling and Experimental Approaches Reveal Novel Roles of Cortical Dynein in Spindle Dynamics and Centrosome Clustering
Keyword:
Mitotic Spindle
,
Model
,
Mitosis
, and
Centrosome
Creator:
Mercadante, Dayna
Advisor:
Manning, Amity L.
and
Olson, Sarah D
Publisher:
Worcester Polytechnic Institute
Date Created:
2022-05-31
Resource Type:
Dissertation
Degree:
PhD
Unit (Department):
Bioinformatics & Computational Biology
8.
Modeling Approaches to Understanding Bumblebee Behavior and Population Decline
Keyword:
Simulation
,
Pollinator Decline
,
Bumblebees
,
Memory
,
Deep Learning
, and
Agent-based model
Creator:
Heath, Kevin
Advisor:
Ryder, Elizabeth F.
Publisher:
Worcester Polytechnic Institute
Date Created:
2022-08-12
Resource Type:
Dissertation
Degree:
PhD
Unit (Department):
Bioinformatics & Computational Biology
9.
Sleep Duration and Quality Assessment using Smartphones
Creator:
Peng, Yuxiao
Advisor:
Agu, Emmanuel O.
Publisher:
Worcester Polytechnic Institute
Date Created:
2020-05-18
Resource Type:
Thesis
Degree:
MS
Unit (Department):
Bioinformatics & Computational Biology
10.
Patterns of Viral Signal Peptide Sequences and their Corresponding Hosts
Keyword:
Virus
,
Viral-host evolution
,
Phylogeny
, and
Signal peptides
Creator:
Le, Ann-Elizabeth V.
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2020-09-20
Resource Type:
Thesis
Degree:
MS
Unit (Department):
Bioinformatics & Computational Biology
11.
A landscape of population-specific variation effects on ligand binding site in the healthy population
Creator:
Sun, Mo
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2021-04-28
Resource Type:
Thesis
Degree:
MS
Unit (Department):
Bioinformatics & Computational Biology
12.
ELUCIDATION OF PERSISTENT MUTATIONAL LANDSCAPE IN SARS-CoV-2 MAIN PROTEASE: A STRUCTURAL BIOINFORMATICS ANALYSIS
Keyword:
SARS-CoV-2, Main Protease, spatial-temporal, mutation, persistent, selection, molecular dynamics
Creator:
Mkandawire, Winnie
Advisor:
Korkin, Dmitry
and
Schiffer, Celia
Publisher:
Worcester Polytechnic Institute
Date Created:
2021-05-06
Resource Type:
Thesis
Degree:
MS
Unit (Department):
Bioinformatics & Computational Biology
13.
Analysis of the Relationship Between Co-localization of Proteins in Protein Assemblies and Protein Proximity in 3-D Space
Creator:
Xie, Longsheng
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2020-05-18
Resource Type:
Thesis
Degree:
MS
Unit (Department):
Bioinformatics & Computational Biology
14.
In Silico Edgetic Profiling and Network Analysis of Human Genetic Variants, with an Application to Disease Module Detection
Keyword:
Next Generation Sequencing
Creator:
Cui, Hongzhu
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2020-05-18
Resource Type:
Dissertation
Degree:
PhD
Unit (Department):
Bioinformatics & Computational Biology
15.
Genome Studies of Gene Expression and Alternative Splicing During iPSC Skeletal Muscle Induction and Differentiation
Keyword:
Iso-Seq
,
novel genes and transcripts
,
FSHD
,
differential expression
,
functional analysis
, and
iPSC
Creator:
Wu, Yibo
Advisor:
Wu, Zheyang
Publisher:
Worcester Polytechnic Institute
Date Created:
2019-05-31
Resource Type:
Thesis
Degree:
MS
Unit (Department):
Bioinformatics & Computational Biology
16.
Simulations of Different P-values Combination Methods Using SNPs on Diverse Biology Levels
Keyword:
statistical power
,
haplotype block
,
p-value combination methods
,
Omni-TFisher
, and
GEFOS
Creator:
Zhang, Ruosi
Advisor:
Wu, Zheyang
Publisher:
Worcester Polytechnic Institute
Date Created:
2019-05-30
Resource Type:
Thesis
Degree:
MS
Unit (Department):
Bioinformatics & Computational Biology
17.
Studying inter- and intra-tumor heterogeneity of triple-negative breast cancer
Keyword:
unsupervised learning
,
clustering
,
TNBC
, and
cancer
Creator:
Leshchyk, Anastasia
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2019-04-28
Resource Type:
Thesis
Degree:
MS
Unit (Department):
Bioinformatics & Computational Biology
18.
Propensity of Endogenous Alternative Splicing to Mediate Mutative Damage
Keyword:
Mutation
,
Alternative Splicing
,
Cancer
,
mRNAseq
,
Statistics
, and
Machine Learning
Creator:
Lutz, Ashley
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2019-04-25
Resource Type:
Thesis
Degree:
MS
Unit (Department):
Bioinformatics & Computational Biology
19.
Leveraging Omics Data to Expand the Value and Understanding of Alternative Splicing
Keyword:
Omics
and
Alternative Splicing
Creator:
Johnson, Nathan T.
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2019-04-08
Resource Type:
Dissertation
Degree:
PhD
Unit (Department):
Bioinformatics & Computational Biology
20.
Designing a realistic virtual bumblebee
Keyword:
virtual
,
bumblebee
,
netlogo
,
agent-based modeling
, and
optimal forage theory
Creator:
Marsden, Timothy
Advisor:
Ryder, Elizabeth F.
Publisher:
Worcester Polytechnic Institute
Date Created:
2016-02-09
Resource Type:
Thesis
Degree:
MS
Unit (Department):
Bioinformatics & Computational Biology
21.
Gene fusions in cancer: Classification of fusion events and regulation patterns of fusion pathway neighbors
Keyword:
Cancer
,
semi-supervised machine learning
,
gene fusion
,
Machine Learning
, and
chromosomal abnormalities
Creator:
Hughes, Katelyn
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2016-05-05
Resource Type:
Thesis
Degree:
MS
Unit (Department):
Bioinformatics & Computational Biology
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Amato, Sara
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12
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Unit (Department)
Bioinformatics & Computational Biology
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Thesis
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